Serveur d'exploration sur le patient édenté

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing.

Identifieur interne : 004263 ( Main/Exploration ); précédent : 004262; suivant : 004264

Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing.

Auteurs : Kimberly D. Cephas [États-Unis] ; Juhee Kim ; Rose Ann Mathai ; Kathleen A. Barry ; Scot E. Dowd ; Brandon S. Meline ; Kelly S. Swanson

Source :

RBID : pubmed:21853142

Descripteurs français

English descriptors

Abstract

Bacterial contribution to oral disease has been studied in young children, but there is a lack of data addressing the developmental perspective in edentulous infants. Our primary objectives were to use pyrosequencing to phylogenetically characterize the salivary bacterial microbiome of edentulous infants and to make comparisons against their mothers. Saliva samples were collected from 5 edentulous infants (mean age = 4.6±1.2 mo old) and their mothers or primary care givers (mean age = 30.8±9.5 y old). Salivary DNA was extracted, used to generate DNA amplicons of the V4-V6 hypervariable region of the bacterial 16S rDNA gene, and subjected to 454-pyrosequencing. On average, over 80,000 sequences per sample were generated. High bacterial diversity was noted in the saliva of adults [1012 operational taxonomical units (OTU) at 3% divergence] and infants (578 OTU at 3% divergence). Firmicutes, Proteobacteria, Actinobacteria, and Fusobacteria were predominant bacterial phyla present in all samples. A total of 397 bacterial genera were present in our dataset. Of the 28 genera different (P<0.05) between infants and adults, 27 had a greater prevalence in adults. The exception was Streptococcus, which was the predominant genera in infant saliva (62.2% in infants vs. 20.4% in adults; P<0.05). Veillonella, Neisseria, Rothia, Haemophilus, Gemella, Granulicatella, Leptotrichia, and Fusobacterium were also predominant genera in infant samples, while Haemophilus, Neisseria, Veillonella, Fusobacterium, Oribacterium, Rothia, Treponema, and Actinomyces were predominant in adults. Our data demonstrate that although the adult saliva bacterial microbiome had a greater OTU count than infants, a rich bacterial community exists in the infant oral cavity prior to tooth eruption. Streptococcus, Veillonella, and Neisseria are the predominant bacterial genera present in infants. Further research is required to characterize the development of oral microbiota early in life and identify environmental factors that impact colonization and oral and gastrointestinal disease risk.

DOI: 10.1371/journal.pone.0023503
PubMed: 21853142


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing.</title>
<author>
<name sortKey="Cephas, Kimberly D" sort="Cephas, Kimberly D" uniqKey="Cephas K" first="Kimberly D" last="Cephas">Kimberly D. Cephas</name>
<affiliation wicri:level="2">
<nlm:affiliation>Division of Nutritional Sciences, University of Illinois, Urbana, Illinois, United States of America.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Division of Nutritional Sciences, University of Illinois, Urbana, Illinois</wicri:regionArea>
<placeName>
<region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Kim, Juhee" sort="Kim, Juhee" uniqKey="Kim J" first="Juhee" last="Kim">Juhee Kim</name>
</author>
<author>
<name sortKey="Mathai, Rose Ann" sort="Mathai, Rose Ann" uniqKey="Mathai R" first="Rose Ann" last="Mathai">Rose Ann Mathai</name>
</author>
<author>
<name sortKey="Barry, Kathleen A" sort="Barry, Kathleen A" uniqKey="Barry K" first="Kathleen A" last="Barry">Kathleen A. Barry</name>
</author>
<author>
<name sortKey="Dowd, Scot E" sort="Dowd, Scot E" uniqKey="Dowd S" first="Scot E" last="Dowd">Scot E. Dowd</name>
</author>
<author>
<name sortKey="Meline, Brandon S" sort="Meline, Brandon S" uniqKey="Meline B" first="Brandon S" last="Meline">Brandon S. Meline</name>
</author>
<author>
<name sortKey="Swanson, Kelly S" sort="Swanson, Kelly S" uniqKey="Swanson K" first="Kelly S" last="Swanson">Kelly S. Swanson</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2011">2011</date>
<idno type="RBID">pubmed:21853142</idno>
<idno type="pmid">21853142</idno>
<idno type="doi">10.1371/journal.pone.0023503</idno>
<idno type="wicri:Area/PubMed/Corpus">001734</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001734</idno>
<idno type="wicri:Area/PubMed/Curation">001734</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001734</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001734</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001734</idno>
<idno type="wicri:Area/Ncbi/Merge">003830</idno>
<idno type="wicri:Area/Ncbi/Curation">003830</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">003830</idno>
<idno type="wicri:Area/Main/Merge">004289</idno>
<idno type="wicri:Area/Main/Curation">004263</idno>
<idno type="wicri:Area/Main/Exploration">004263</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing.</title>
<author>
<name sortKey="Cephas, Kimberly D" sort="Cephas, Kimberly D" uniqKey="Cephas K" first="Kimberly D" last="Cephas">Kimberly D. Cephas</name>
<affiliation wicri:level="2">
<nlm:affiliation>Division of Nutritional Sciences, University of Illinois, Urbana, Illinois, United States of America.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Division of Nutritional Sciences, University of Illinois, Urbana, Illinois</wicri:regionArea>
<placeName>
<region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Kim, Juhee" sort="Kim, Juhee" uniqKey="Kim J" first="Juhee" last="Kim">Juhee Kim</name>
</author>
<author>
<name sortKey="Mathai, Rose Ann" sort="Mathai, Rose Ann" uniqKey="Mathai R" first="Rose Ann" last="Mathai">Rose Ann Mathai</name>
</author>
<author>
<name sortKey="Barry, Kathleen A" sort="Barry, Kathleen A" uniqKey="Barry K" first="Kathleen A" last="Barry">Kathleen A. Barry</name>
</author>
<author>
<name sortKey="Dowd, Scot E" sort="Dowd, Scot E" uniqKey="Dowd S" first="Scot E" last="Dowd">Scot E. Dowd</name>
</author>
<author>
<name sortKey="Meline, Brandon S" sort="Meline, Brandon S" uniqKey="Meline B" first="Brandon S" last="Meline">Brandon S. Meline</name>
</author>
<author>
<name sortKey="Swanson, Kelly S" sort="Swanson, Kelly S" uniqKey="Swanson K" first="Kelly S" last="Swanson">Kelly S. Swanson</name>
</author>
</analytic>
<series>
<title level="j">PloS one</title>
<idno type="eISSN">1932-6203</idno>
<imprint>
<date when="2011" type="published">2011</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Adult</term>
<term>Bacteria (genetics)</term>
<term>Base Sequence</term>
<term>Caregivers</term>
<term>Cluster Analysis</term>
<term>Female</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Infant</term>
<term>Male</term>
<term>Metagenome (genetics)</term>
<term>Mothers</term>
<term>Mouth (microbiology)</term>
<term>Mouth, Edentulous (microbiology)</term>
<term>Principal Component Analysis</term>
<term>Saliva (microbiology)</term>
<term>Sequence Analysis, DNA (methods)</term>
<term>Temperature</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Adulte</term>
<term>Aidants</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN ()</term>
<term>Analyse en composantes principales</term>
<term>Bactéries (génétique)</term>
<term>Bouche (microbiologie)</term>
<term>Bouche édentée (microbiologie)</term>
<term>Femelle</term>
<term>Humains</term>
<term>Mâle</term>
<term>Mères</term>
<term>Métagénome (génétique)</term>
<term>Nourrisson</term>
<term>Salive (microbiologie)</term>
<term>Séquence nucléotidique</term>
<term>Température</term>
<term>Variation génétique</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Bacteria</term>
<term>Metagenome</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Bactéries</term>
<term>Métagénome</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Bouche</term>
<term>Bouche édentée</term>
<term>Salive</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Mouth</term>
<term>Mouth, Edentulous</term>
<term>Saliva</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Adult</term>
<term>Base Sequence</term>
<term>Caregivers</term>
<term>Cluster Analysis</term>
<term>Female</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Infant</term>
<term>Male</term>
<term>Mothers</term>
<term>Principal Component Analysis</term>
<term>Temperature</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Adulte</term>
<term>Aidants</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Analyse en composantes principales</term>
<term>Femelle</term>
<term>Humains</term>
<term>Mâle</term>
<term>Mères</term>
<term>Nourrisson</term>
<term>Séquence nucléotidique</term>
<term>Température</term>
<term>Variation génétique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Bacterial contribution to oral disease has been studied in young children, but there is a lack of data addressing the developmental perspective in edentulous infants. Our primary objectives were to use pyrosequencing to phylogenetically characterize the salivary bacterial microbiome of edentulous infants and to make comparisons against their mothers. Saliva samples were collected from 5 edentulous infants (mean age = 4.6±1.2 mo old) and their mothers or primary care givers (mean age = 30.8±9.5 y old). Salivary DNA was extracted, used to generate DNA amplicons of the V4-V6 hypervariable region of the bacterial 16S rDNA gene, and subjected to 454-pyrosequencing. On average, over 80,000 sequences per sample were generated. High bacterial diversity was noted in the saliva of adults [1012 operational taxonomical units (OTU) at 3% divergence] and infants (578 OTU at 3% divergence). Firmicutes, Proteobacteria, Actinobacteria, and Fusobacteria were predominant bacterial phyla present in all samples. A total of 397 bacterial genera were present in our dataset. Of the 28 genera different (P<0.05) between infants and adults, 27 had a greater prevalence in adults. The exception was Streptococcus, which was the predominant genera in infant saliva (62.2% in infants vs. 20.4% in adults; P<0.05). Veillonella, Neisseria, Rothia, Haemophilus, Gemella, Granulicatella, Leptotrichia, and Fusobacterium were also predominant genera in infant samples, while Haemophilus, Neisseria, Veillonella, Fusobacterium, Oribacterium, Rothia, Treponema, and Actinomyces were predominant in adults. Our data demonstrate that although the adult saliva bacterial microbiome had a greater OTU count than infants, a rich bacterial community exists in the infant oral cavity prior to tooth eruption. Streptococcus, Veillonella, and Neisseria are the predominant bacterial genera present in infants. Further research is required to characterize the development of oral microbiota early in life and identify environmental factors that impact colonization and oral and gastrointestinal disease risk.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
<region>
<li>Illinois</li>
</region>
</list>
<tree>
<noCountry>
<name sortKey="Barry, Kathleen A" sort="Barry, Kathleen A" uniqKey="Barry K" first="Kathleen A" last="Barry">Kathleen A. Barry</name>
<name sortKey="Dowd, Scot E" sort="Dowd, Scot E" uniqKey="Dowd S" first="Scot E" last="Dowd">Scot E. Dowd</name>
<name sortKey="Kim, Juhee" sort="Kim, Juhee" uniqKey="Kim J" first="Juhee" last="Kim">Juhee Kim</name>
<name sortKey="Mathai, Rose Ann" sort="Mathai, Rose Ann" uniqKey="Mathai R" first="Rose Ann" last="Mathai">Rose Ann Mathai</name>
<name sortKey="Meline, Brandon S" sort="Meline, Brandon S" uniqKey="Meline B" first="Brandon S" last="Meline">Brandon S. Meline</name>
<name sortKey="Swanson, Kelly S" sort="Swanson, Kelly S" uniqKey="Swanson K" first="Kelly S" last="Swanson">Kelly S. Swanson</name>
</noCountry>
<country name="États-Unis">
<region name="Illinois">
<name sortKey="Cephas, Kimberly D" sort="Cephas, Kimberly D" uniqKey="Cephas K" first="Kimberly D" last="Cephas">Kimberly D. Cephas</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Santé/explor/EdenteV2/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 004263 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 004263 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Santé
   |area=    EdenteV2
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:21853142
   |texte=   Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:21853142" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a EdenteV2 

Wicri

This area was generated with Dilib version V0.6.32.
Data generation: Thu Nov 30 15:26:48 2017. Site generation: Tue Mar 8 16:36:20 2022